Index:

  1. X:Map Human Core Database
  2. X:Map Mouse Core Database
  3. X:Map Rat Core Database
  4. XMapBridge
  5. X:Map Dashboard Control
  6. Human Exon CDF
  7. Mouse Exon CDF
  8. Rat Exon CDF
  9. Old "exonmap" Human Database
  10. Old "exonmap" Mouse Database
  11. Old "exonmap" Rat Database

X:Map Human Core Database

This is the core database for the new xmapcore R package for data analysis

Filename Version
Under Construction

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X:Map Mouse Core Database

This is the core database for the new xmapcore R package for data analysis

Filename Version
Under Construction

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X:Map Rat Core Database

This is the core database for the new xmapcore R package for data analysis

Filename Version
Under Construction

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XMapBridge

The X:Map Bridge is an application which stands between an R session and the X:Map website. It allows you to overlay your data as a single or multiple plot directly onto the desired genome. There are 2 parts to the XMapBridge, this Java part and an R library which can be found on the Bioconductor site. (Without the R package, this Java part will just run in demo mode)

Filename Version
XMapBridge3.0.tar.gz 3.0

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X:Map Dashboard Control

This is a dashboard component for the OS X dashboard which lets you query X:Map without firing up a browser, and navigating here. It only currently provides textual information (no gene plotting).

Filename Version
Under Construction

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Human Exon CDF

The CDF R metadata packages for Human, Mouse and Rat Exon 1.0 ST microarrays have been created from original Affymetrix ASCII chip description files using the makecdfenv and altcdfenvs BioConductor toolboxes.

All the background and control probesets have been removed. These packages most likely require a 64bit machine to run properly. To install the package, download the relevant tarball, and install with the usual command:

R CMD INSTALL DOWNLOADED_FILE.tar.gz

To attach the CDF to the AffyBatch object:

R> my.affy.batch@cdfName <- "DOWNLOADED_FILE"

Filename Version
exon.pmcdf_1.1.tar.gz 1.1
exon.pmcdf.tar.gz 1.0

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Mouse Exon CDF

See the Homo Sapiens CDF for a full description

Filename Version
mouseexonpmcdf_1.1.tar.gz 1.1
mouseexonpmcdf.tar.gz 1.0

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Rat Exon CDF

See the Human CDF for a full description

Filename Version
ratexonpmcdf_1.1.tar.gz 1.1

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Old "exonmap" Human Database

This is the core database for the Homo Sapiens X:Map system. It is required by the exonmap R package if you wish to perform analysis on your own machine.

Please note: There is a new R package coming soon for our new database structure. This is just here by way of an archive

Filename Version
xmap_homo_sapiens_core_56_37a.tgz 56
xmap_homo_sapiens_core_52_36n.tgz 52
xmap_homo_sapiens_core_50_36l.tgz 50
xmap_homo_sapiens_core_47_36i.tgz 47
xmap_homo_sapiens_core_45_36g.tgz 45

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Old "exonmap" Mouse Database

This is the core database for the Mus Musculus X:Map system. It is required by the R package if you wish to perform analysis on your own machine.

Please note: There is a new R package coming soon for our new database structure. This is just here by way of an archive

Filename Version
xmap_mus_musculus_core_56_37i.tgz 56
xmap_mus_musculus_core_52_37e.tgz 52
xmap_mus_musculus_core_50_37c.tgz 50
xmap_mus_musculus_core_47_37.tgz 47
xmap_mus_musculus_core_45_36f.tgz 45

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Old "exonmap" Rat Database

This is the core database for the Rattus Norvegicus X:Map system. It is required by the R package if you wish to perform analysis on your own machine.

Please note: There is a new R package coming soon for our new database structure. This is just here by way of an archive

Filename Version
xmap_rattus_norvegicus_core_56_34x.tgz 56
xmap_rattus_norvegicus_core_52_34u.tgz 52
xmap_rattus_norvegicus_core_50_34t.tgz 50
xmap_rattus_norvegicus_core_47_34q.tgz 47
xmap_rattus_norvegicus_core_45_34o.tgz 45

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